Additional documents are available for some publications at Dr. Rosenberg's bioinformatics lab website
Recent Articles | Articles (1999-2004) | Review Articles | Editorial Material
David, L., Rosenberg, N.A., Lavi, U., Feldman, M.W., Hillel, J. (2007). Genetic diversity and population structure inferred from the partially duplicated genome of domesticated carp, Cyprinus carpio L. Genet Sel Evol. 39, 319-40. PubMed Link
Schroeder, K.B., Schurr, T.G., Long, J.C., Rosenberg, N.A., Crawford, M.H., Tarskaia, L.A., Osipova, L.P., Zhadanov, S.I., Smith, D.G. (2007). A private allele ubiquitous in the Americas. Biol Lett. 3, 218-23. PubMed Link
Rosenberg, N.A., Mahajan, S., Gonzalez-Quevedo, C., Blum, M.G.B., Nino-Rosales, L., Ninis, V., Das, P., Hegde, M., Molinari, L., Zapata, G., Weber, J.L., Belmont, J.W., Patel, P.I. (2006). Low levels of genetic divergence across geographically and linguistically diverse populations from India. PLoS Genetics 2, e215. PubMed Link
Rosenberg, N.A., Blum, M.G.B. (2007). Sampling properties of homozygosity-based statistics for linkage disequilibrium. Mathematical Biosciences 208, 33-47. PubMed Link
Jakobsson, M., Rosenberg, N.A. (2007). The probability distribution under a population divergence model of the number of genetic founding lineages of a population or species. Theor Popul Biol. 71, 502-23. PubMed Link
Conrad, D.F., Jakobsson, M., Coop, G., Wen, X., Wall, J.D., Rosenberg, N.A., Pritchard, J.K. (2006). A worldwide survey of haplotype variation and linkage disequilibrium in the human genome. Nature Genetics 38, 1251-1260. Abstract
Rosenberg, N.A. (2006). Standardized subsets of the HGDP-CEPH Human Genome Diversity Cell Line Panel, accounting for atypical and duplicated samples and pairs of close relatives. Annals of Human Genetics 70, 841-847. Abstract
Innan, H., Zhang, K. Y., Marjoram, P., Tavare, S., & Rosenberg, N. A. (2005). Statistical tests of the coalescent model based on the haplotype frequency distribution and the number of segregating sites. Genetics, 169, 1763-1777. PubMed Link
Rosenberg, N.A. (2005). Algorithms for selecting informative marker panels for population assignment. Journal of Computational Biology, 12, 1183-1201. PubMed Link
Rosenberg, N.A., Nordborg, M. (2006). A general population-genetic model for the production by population structure of spurious genotype-phenotype associations in discrete, admixed, or spatially distributed populations. Genetics 173, 1665-1678. Abstract
Rosenberg, N. A. (2005). A sharp minimum on the mean number of steps taken in adaptive walks. Journal of Theoretical Biology, 237, 17-22. PubMed Link
Nordborg, M., Hu, T. T., Ishino, Y., Jhaveri, J., Toomajian, C., Zheng, H. G., Bakker, E., Calabrese, P., Gladstone, J., Goyal, R., Jakobsson, M., Kim, S., Morozov, Y., Padhukasahasram, B., Plagnol, V., Rosenberg, N. A., Shah, C., Wall, J. D., Wang, J., Zhao, K. Y., Kalbfleisch, T., Schulz, V., Kreitman, M., & Bergelson, J. (2005). The pattern of polymorphism in Arabidopsis thaliana. PLOS Biology, 3, 1289-1299. PubMed Link
Rosenberg, N. A., Mahajan, S., Ramachandran, S., Zhao, C. F., Pritchard, J. K., & Feldman, M. W. (2005). Clines, clusters, and the effect of study design on the inference of human population structure. PLOS Genetics, 1, 660-671. PubMed Link
Ramachandran, S., Deshpande, O., Roseman, C. C., Rosenberg, N. A., Feldman, M. W., & Cavalli-Sforza, L. L. (2005). Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa. Proceedings of the National Academy of Sciences of the USA, 102, 15942-15947. PubMed Link
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Tanaka, M. M., Rosenberg, N. A., & Small, P. M. (2004). The control of copy number of IS6110 in Mycobacterium tuberculosis. Molecular Biology and Evolution, 21, 2195-2201. PubMed Link
Rosenberg, N. A. (2004). DISTRUCT: a program for the graphical display of population structure. Molecular Ecology Notes, 4, 137-138.
Rosenberg, N. A., & Calabrese, P. P. (2004). Polyploid and multilocus extensions of the Wahlund inequality. Theoretical Population Biology, 66, 381-391. PubMed Link
Zhivotovsky, L. A., Rosenberg, N. A., & Feldman, M. W. (2003). Features of evolution and expansion of modern humans, inferred from genomewide microsatellite markers. American Journal of Human Genetics, 72, 1171-1186. PubMed
Rosenberg, N. A., Li, L. M., Ward, R., & Pritchard, J. K. (2003). Informativeness of genetic markers for inference of ancestry. American Journal of Human Genetics, 73, 1402-1422. PubMed Link
Rosenberg, N. A. (2003). The shapes of neutral gene genealogies in two species: Probabilities of monophyly, paraphyly, and polyphyly in a coalescent model. Evolution, 57, 1465-1477. PubMed Link
Rosenberg, N. A., & Hirsh, A. E. (2003). On the use of star-shaped genealogies in inference of coalescence times. Genetics, 164, 1677-1682. PubMed Link
Rosenberg, N. A., Tsolaki, A. G., & Tanaka, M. M. (2003). Estimating change rates of genetic markers using serial samples: applications to the transposon IS6110 in Mycobacterium tuberculosis. Theoretical Population Biology, 63, 347-363. PubMed Link
Rosenberg, N. A., Pritchard, J. K., Weber, J. L., Cann, H. M., Kidd, K. K., Zhivotovsky, L. A., & Feldman, M. W. (2002). Genetic structure of human populations. Science, 298, 2381-2385. PubMed Link
Rosenberg, N. A. (2002). The probability of topological concordance of gene trees and species trees. Theoretical Population Biology, 61, 225-247. PubMed Link
Rosenberg, N. A., Burke, T., Elo, K., Feldman, M. W., Freidlin, P. J., Groenen, M. A. M., Hillel, J., Maki-Tanila, A., Tixier-Boichard, M., Vignal, A., Wimmers, K., & Weigend, S. (2001). Empirical evaluation of genetic clustering methods using multilocus genotypes from 20 chicken breeds. Genetics, 159, 699-713. PubMed Link
Rosenberg, N. A., Woolf, E., Pritchard, J. K., Schapp, T., Gefel, D., Shpirer, I., Lavi, U., Bonne-Tamir, B., Hillel, J., & Feldman, M. W. (2001). Distinctive genetic signatures in the Libyan Jews. Proceedings of the National Academy of Sciences of the USA, 98, 858-863. PubMed Link
Tanaka, M. M., & Rosenberg, N. A. (2001). Optimal estimation of transposition rates of insertion sequences for molecular epidemiology. Statistics in Medicine, 20, 2409-2420. PubMed Link
Pritchard, J. K., Stephens, M., Rosenberg, N. A., & Donnelly, P. (2000). Association mapping in structured populations. American Journal of Human Genetics, 67, 170-181. PubMed Link
Jin, L., Baskett, M. L., Cavalli-Sforza, L. L., Zhivotovsky, L. A., Feldman, M. W., & Rosenberg, N. A. (2000). Microsatellite evolution in modern humans: a comparison of two data sets from the same populations. Annals of Human Genetics, 64, 117-134. PubMed Link
Pritchard, J. K., & Rosenberg, N. A. (1999). Use of unlinked genetic markers to detect population stratification in association studies. American Journal of Human Genetics, 65, 220-228. PubMed Link
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Rosenberg, N. A., & Nordborg, M. (2002). Genealogical trees, coalescent theory and the analysis of genetic polymorphisms. Nature Reviews Genetics, 3, 380-390.
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Rosenberg, N. A., Pritchard, J. K., Weber, J. L., Cann, H. M., Kidd, K. K., Zhivotovsky, L. A., & Feldman, M. W. (2003). Response to comment on "Genetic structure of human populations". Science, 300.
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